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Best CMS for shopping cart is depend upon the daily traffic and popularity of site for normal online eCommerce shopping cart website you can use any of fallowing.
WooCommerce
osCommerce
Drupal Commerce
Opencart
Most popular and best tool is PrestaShop who wins the2014 People's Choice CMS Award for Best eCommerce Solution.
It depends what type of "feel" you are trying to achieve with your site
but it comes down to two in my books
woocommerce
magento
WooComerce, Its easy to manage and it gets the job done.
Its Depend on your project.
For big business used Magento
For just few products used WordPress WooCommerce
I would prefer Magento, it is a complete package for shop cart
Ø Business Catalyst
Ø Magento
Ø PrestaShop
Ø OpenCart
Ø osCSS
Joomla, Wordpress, Magento, Drupal