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You cannot do an automatic backup of config in WLC 5500 whereas you can schedule a reboot . You can still used the commands below for initiating a config backup
WLC>transfer upload datatype config
WLC>transfer upload mode tftp/sftp
WLC>transfer upload path <location of config file>
WLC>transfer upload serverip <IP of TFTP server>
WLC>transfer upload start
Cisco Prime Infrastructure would be the easiest way to automate the WLC configuration backup at regular interval.