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GAP analysis is a personal behavior along with proper training imparted. It is always better to call up a meeting consisting of professionals from different department, sit together and chalk out issues being faced. A good manager with sincere efforts and help team to collaborate and use them effectively. There are different gap analysis techniques, optimization tools, linear methods, etc each of which would fit it for different field of science or department.
SWOT Analysis and benchmarking the existing system against the best practices of the Industry are the most effective tools for GAP Analysis.